TORONTO METROPOLITAN UNIVERSITY

Course Outline (W2025)

BME804: Design of Bio-MEMS

Instructor(s)Steven Tran [Coordinator]
Office: LKS735
Phone: TBA
Email: s10tran@torontomu.ca
Office Hours: Mondays 11:00am - 12:00pm
Calendar DescriptionBiophysical and chemical principles of biomedical microelectromechanical systems (bioMEMS) for the measurement of biological phenomena and clinical applications. micro-and nano-scale devices for the manipulation of cells and biomolecules. Topics include solid-state transducers, optical transducers, electrochemical transducers, biomedical microelectronics, microfluidics, and hybrid integration of microfabrication technology.
PrerequisitesBME 423 and BME 674 and BME 634
Antirequisites

None

Corerequisites

None

Compulsory Text(s):
  1. No compulsory text. BME804 Lecture notes.
Reference Text(s):
  1. Introduction to BioMEMS, 1st Edition, by Albert Folch, 2012.
Learning Objectives (Indicators)  

At the end of this course, the successful student will be able to:

  1. Understand the biophysical and chemical principles to design biomedical micorelectromechanical systems (BioMEMS) for measurement of biological phenomena and to design solutions to biomedical problems. (1c)
  2. Adopt biophysical and chemical principles to conceptualize the modeling and the design of BioMEMS devices. (1d)
  3. Model and test BioMEMS components and devices through software simulations (using Coventorware software) and critically evaluate the implications of component/device parameters modifications on overall design, independently and in lab/project teams. (2b), (3a), (5a), (6a)
  4. Understand, apply and critically evaluate the design, fabrication, and operation of BioMEMS components (e.g. optical transducers, electrochemical transducers, biomedical electronics, microfluids, hybrid integration of micofabrication technology) to address medical issues and applications. (4b)
  5. Communicate an understanding of fundamental theoretical and practical principles and critical evaluation of BioMEMS designs through written laboratory reports, written assignments and oral project presentations evaluated on grammar, completeness, clarity and design innovation. (7a), (7b), (7c)
  6. Understand, apply and critically evaluate the design, fabrication, and operation of BioMEMS components (e.g. optical transducers, electrochemical transducers, biomedical electronics, microfluids, hybrid integration of microfabrication technology) to address medical issues and applications. (12b)

NOTE:Numbers in parentheses refer to the graduate attributes required by the Canadian Engineering Accreditation Board (CEAB).

Course Organization

3.0 hours of lecture per week for 13 weeks
1.0 hours of lab per week for 12 weeks
1.0 hours of tutorial per week for 12 weeks

Teaching AssistantsSteven, Sina
Course Evaluation
Theory
Midterm Exam 25 %
Final Exam 35 %
Course Projects 20 %
Laboratory
3 Labs ( 5%, 7.5%, 7.5%) 20 %
TOTAL:100 %

Note: In order for a student to pass a course, a minimum overall course mark of 50% must be obtained. In addition, for courses that have both "Theory and Laboratory" components, the student must pass the Laboratory and Theory portions separately by achieving a minimum of 50% in the combined Laboratory components and 50% in the combined Theory components. Please refer to the "Course Evaluation" section above for details on the Theory and Laboratory components (if applicable).


ExaminationsMidterm exam will be held in Week 9 of the course on Mar 5 at 12pm, lasting for 3 hours, closed book and will cover all material from Weeks 1-6.
 In case of missed midterm, a makeup midterm will be scheduled.
 Final exam during exam period will be three hours, closed-book and will cover all material from Weeks 1-12.
 
Other Evaluation InformationLabs will start in week 3. All labs will be related to the design and simulation of bioMEMS components/devices using the software package of Coventorware. The laboratory manuals will be posted on course shell on D2L. The introductory lab will be worth 5%. Labs 1 and 2 will worth 7.5% each.
 
 
 Course Project: Students will complete a course project on a topic of their choosing. Students will work in groups of 4 members (where applicable). Groups must be formed and group topic selected by week 4 of the term and must be approved by the course instructor (topics entered in the provided spreadsheet by 5pm Friday week 4). Details of the term project will be given during class and posted on the BME804 course shell.
 
 Project assessment:
 1 - Project outline due in week 6 in D2L (20%)
 2 - Project description due in week 10 in D2L (30%)
 3 - Final presentations: Each group will present their course project in a 30-min presentation. Each member of the group must present (approx 7-8 min each). (50%)
 
 
Other InformationLectures: Wednesday 12:00pm - 3:00pm DCC103
 Lectures in general consist of:
 - Lecture material (course topics, examples etc.)
 - Group activities (discussions, project work)
 - Offline coursework (reading material, assignments, watch prerecoded videos (where applicable), self-organized group meetings etc.)
 
 

Course Content

Week

Hours

Chapters /
Section

Topic, description

1

3

Lecture Topic 1: Introduction to MEMS and bioMEMS. Introduction to bio-MEMS and their applications. Current use of bio-MEMS devices.


2

3

Lecture Topic 2: Miniaturizing devices, silicon microfabrication (photolithography, UV exposure, etching methods, resist stripping).


3

3

Lecture Topic 3 : Micro total analysis systems (microTAS), micromachining, stop flow lithography.


4

3

Lecture Topic 4: Life at the low Reynolds number, cell mechanics at low Reynolds number, applications to microTAS devices.
 Course Project: Group members and Project topic selection should be finalized.


5

3

Lecture Topic 5: Microfluidics part 1: microfluidics lab-on-a-chip materials.


6

3

Lecture Topic 6: Microfluidics part 2: fluid dynamic principles, electrophoresis, streaming potential, applications to lab-on-a-chip devices.


7

3

No class - study week.


8

3

Lecture Topic 7: Sensing principles in bio-MEMS. thermal, mechanical, flow, magnetic and optical sensors.
 


9

3

Midterm


10

3

Lecture Topic 8: Drug delivery systems. Passive, active, bio-MEMS as drug delivery systems, using bio-MEMS for downstream applications of drug delivery systems.


11

3

Lecture Topic 9: Bio-MEMS for cell biology.


12

3

Lecture Topic 10: Bio-MEMS for molecular biology.


13

3

Lecture Topic 11: Designing economic, informative and accessible bio-MEMS devices.
 Course Project: Project Presentations & Review


Laboratory(L)/Tutorials(T)/Activity(A) Schedule

Week

L/T/A

Description

3-4

1

Lab 1- Introduction to ConventorWare & design example.
 Reports due in week 4, by Friday at 11:50PM

5-9

2

Lab 2 - Electrostatic 2D micro-mirror design and simulation.
 Reports due in week 9, by Friday at 11:50PM

10-12

3

Lab 3 - Electro-thermal micro-gripper Simulation.
 Reports due in week 12, by Friday at 11:50PM

University Policies & Important Information

Students are reminded that they are required to adhere to all relevant university policies found in their online course shell in D2L and/or on the Senate website

Refer to the Departmental FAQ page for furhter information on common questions.

Important Resources Available at Toronto Metropolitan University

Accessibility

Academic Accommodation Support

Academic Accommodation Support (AAS) is the university's disability services office. AAS works directly with incoming and returning students looking for help with their academic accommodations. AAS works with any student who requires academic accommodation regardless of program or course load.

Academic Accommodations (for students with disabilities) and Academic Consideration (for students faced with extenuating circumstances that can include short-term health issues) are governed by two different university policies. Learn more about Academic Accommodations versus Academic Consideration and how to access each.

Wellbeing Support

At Toronto Metropolitan University, we recognize that things can come up throughout the term that may interfere with a student’s ability to succeed in their coursework. These circumstances are outside of one’s control and can have a serious impact on physical and mental well-being. Seeking help can be a challenge, especially in those times of crisis.

If you are experiencing a mental health crisis, please call 911 and go to the nearest hospital emergency room. You can also access these outside resources at anytime:

If non-crisis support is needed, you can access these campus resources:

We encourage all Toronto Metropolitan University community members to access available resources to ensure support is reachable. You can find more resources available through the Toronto Metropolitan University Mental Health and Wellbeing website.