TORONTO METROPOLITAN UNIVERSITY

Course Outline (W2026)

BME804: Design of Bio-MEMS

Instructor(s)Dr. Virgilio Valente [Coordinator]
Office: ENG450
Phone: (416) 979-5000 x 553728
Email: vvalente@torontomu.ca
Office Hours: Tue 1pm-3pm (weeks 2-13)
Calendar DescriptionBiophysical and chemical principles of biomedical microelectromechanical systems (bioMEMS) for the measurement of biological phenomena and clinical applications. micro-and nano-scale devices for the manipulation of cells and biomolecules. Topics include solid-state transducers, optical transducers, electrochemical transducers, biomedical microelectronics, microfluidics, and hybrid integration of microfabrication technology.
PrerequisitesBME 423 and BME 674 and BME 634
Antirequisites

None

Corerequisites

None

Compulsory Text(s):
  1. No compulsory text. BME804 Lecture notes.
Reference Text(s):
  1. Introduction to BioMEMS, 1st Edition, by Albert Folch, 2012. https://www.amazon.ca/Introduction-BioMEMS-Albert-Folch/dp/0367864967 CAD $101.15
Learning Objectives (Indicators)  

At the end of this course, the successful student will be able to:

  1. Understand the biophysical and chemical principles to design biomedical micorelectromechanical systems (BioMEMS) for measurement of biological phenomena and to design solutions to biomedical problems. (1c)
  2. Adopt biophysical and chemical principles to conceptualize the modeling and the design of BioMEMS devices. (1d)
  3. Model and test BioMEMS components and devices through software simulations (using Coventorware software) and critically evaluate the implications of component/device parameters modifications on overall design, independently and in lab/project teams. (2b), (3a), (5a), (6a)
  4. Understand, apply and critically evaluate the design, fabrication, and operation of BioMEMS components (e.g. optical transducers, electrochemical transducers, biomedical electronics, microfluids, hybrid integration of micofabrication technology) to address medical issues and applications. (4b)
  5. Communicate an understanding of fundamental theoretical and practical principles and critical evaluation of BioMEMS designs through written laboratory reports, written assignments and oral project presentations evaluated on grammar, completeness, clarity and design innovation. (7a), (7b), (7c)
  6. Understand, apply and critically evaluate the design, fabrication, and operation of BioMEMS components (e.g. optical transducers, electrochemical transducers, biomedical electronics, microfluids, hybrid integration of microfabrication technology) to address medical issues and applications. (12b)

NOTE:Numbers in parentheses refer to the graduate attributes required by the Canadian Engineering Accreditation Board (CEAB).

Course Organization

3.0 hours of lecture per week for 13 weeks
1.0 hours of lab per week for 12 weeks
1.0 hours of tutorial per week for 12 weeks

Teaching Assistants- Kanhchana Ly (kanhchana.ly@torontomu.ca)
 - Stephanie McGinnity (stephanie.mcginnity@torontomu.ca)
  
Course Evaluation
Theory
Midterm Exam 25 %
Final Exam 35 %
Course Projects 20 %
Laboratory
3 Labs ( 5%, 7.5%, 7.5%) 20 %
TOTAL:100 %

Note: In order for a student to pass a course, a minimum overall course mark of 50% must be obtained. In addition, for courses that have both "Theory and Laboratory" components, the student must pass the Laboratory and Theory portions separately by achieving a minimum of 50% in the combined Laboratory components and 50% in the combined Theory components. Please refer to the "Course Evaluation" section above for details on the Theory and Laboratory components (if applicable).


ExaminationsMidterm exam will be held in Week 7 of the course on Feb 27 at 9am in DCC350, lasting for 1 hour, closed book and will cover all material from Weeks 1-6.
 In case of missed midterm, a makeup midterm will be scheduled.
 Final exam during exam period will be 2 hours, closed-book and will cover all material after the midterm with focus on topics covered after the mid-term.
 
Other Evaluation InformationLabs will start in week 3. All labs will be related to the design and simulation of bioMEMS components/devices using the software package of Coventorware. The laboratory manuals will be posted on course shell on D2L. The introductory lab will be worth 5%. Labs 1 and 2 will worth 7.5% each.
 
 
 Course Project: Students will complete a course project on a topic of their choosing. Students will work in groups of 4 members (where applicable). Groups must be formed and group topic selected by week 4 of the term and must be approved by the course instructor (topics entered in the provided spreadsheet by 5pm Friday week 4). Details of the term project will be given during class and posted in the Project folder in the BME804 course shell.
 
 Project assessment:
 1 - Project summaries due in week 10 in D2L
 3 - Final presentations: Each group will present their course project in a 20/25-min presentation. Each member of the group must present (approx 5-6 min each).
 
 
 USE OF AI TOOLS
 You may use Generative AI (e.g. ChatGPT, Grammarly, Perplexity, DeepL Translator) in this course. However:
 1. If you misrepresent source material (as AI often does), that will be considered a breach of Policy 60
 2. If your citations are not genuine (AI often makes up references), that will be considered a breach of Policy 60
 3. You are required to write a clear declarative statement describing how AI tools were used and the extent of its contribution to the final submission.
 
Other InformationLectures: Friday 8:00am - 11:00am DCC350
 Lectures in general consist of:
 - Lecture material (course topics, examples etc.)
 - Group activities (discussions, project work)
 - Offline coursework (reading material, assignments, watch prerecoded videos (where applicable), self-organized group meetings etc.)
 
 

Course Content

Week

Hours

Chapters /
Section

Topic, description

1

3

Topic 1. Introduction to MEMS and bioMEMS. Introduction to bio-MEMS and their applications. Current use of bio-MEMS devices.


2

3

Topic 2. Silicon Microfabrication Part I. Mask creation, silicon wafer preparation, photolithography, photoresist (positive or negative), UV exposure and development, etching methods, resist stripping.


3

3

Topic 3. Silicon Microfabrication Part II. Thin films, thin film processes, deposition, micromachining, bonding.


4

3

Topic 4. Soft Fabrication and Polymers: Soft lithography, Micromolding, 3-D Photopolymerization, Smart polymers and hydrogels, Nanomedicine techniques, Thick-film technologies.
 
 Course Project: Group members and Project topic selection should be finalized.


5

3

Topic 5: Microfluidics part 1: microfluidics lab-on-a-chip materials.


6

3

Topic 6: Microfluidics part 2: fluid dynamic principles, electrophoresis, streaming potential, applications to lab-on-a-chip devices.


7

3

Midterm (1 hour, Friday 27 Feb at 9am)


8

3

Topic 7: Sensing principles and microsensors. thermal, mechanical, flow, magnetic and optical sensors.
 


9

3

Topic 8: Microactuators & Drug delivery systems. Passive, active, bio-MEMS as drug delivery systems


10

3

Topic 9. Biosensors


11

3

Topic 10. Packaging Power and Safety: System integration, RF safety, energy harvesting, power transfer data transmission


12

3

No lecture (Easter Friday)


13

3

Review
 
 Course Project: Project Presentations due


Laboratory(L)/Tutorials(T)/Activity(A) Schedule

Week

L/T/A

Description

3-4

1

Lab 1- Introduction to ConventorWare & design example.
 Reports due in week 4, by Friday at 11:59PM

5-8

2

Lab 2 - Electrostatic 2D micro-mirror design and simulation.
 Reports due in week 8, by Friday at 11:59PM

9-11

3

Lab 3 - Electro-thermal micro-gripper simulation.
 Reports due in week 11, by Friday at 11:59PM

University Policies & Important Information

Students are reminded that they are required to adhere to all relevant university policies found in their online course shell in D2L and/or on the Senate website

Refer to the Departmental FAQ page for furhter information on common questions.

Important Resources Available at Toronto Metropolitan University

Lab Safety (if applicable)

Students are to strictly adhere and follow:

  1. The Lab Safety information/guidelines posted in the respective labs,
  2. provided in their respective lab handouts, and
  3. instructions provided by the Teaching Assistants/Course instructors/Technical Staff.

During the lab sessions, to avoid tripping hazards, the area around the lab stations should not be surrounded by bags, backpacks etc, students should place their bags, backpacks etc against the walls of the labs and/or away from their lab stations in such a way that it avoids tripping hazards.

Accessibility

Academic Accommodation Support

Academic Accommodation Support (AAS) is the university's disability services office. AAS works directly with incoming and returning students looking for help with their academic accommodations. AAS works with any student who requires academic accommodation regardless of program or course load.

Academic Accommodations (for students with disabilities) and Academic Consideration (for students faced with extenuating circumstances that can include short-term health issues) are governed by two different university policies. Learn more about Academic Accommodations versus Academic Consideration and how to access each.

Wellbeing Support

At Toronto Metropolitan University, we recognize that things can come up throughout the term that may interfere with a student’s ability to succeed in their coursework. These circumstances are outside of one’s control and can have a serious impact on physical and mental well-being. Seeking help can be a challenge, especially in those times of crisis.

If you are experiencing a mental health crisis, please call 911 and go to the nearest hospital emergency room. You can also access these outside resources at anytime:

If non-crisis support is needed, you can access these campus resources:

We encourage all Toronto Metropolitan University community members to access available resources to ensure support is reachable. You can find more resources available through the Toronto Metropolitan University Mental Health and Wellbeing website.